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» Bioinformatics - an introduction for computer scientists
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FM
2009
Springer
138views Formal Methods» more  FM 2009»
14 years 5 months ago
What Can Formal Methods Bring to Systems Biology?
This position paper argues that the operational modelling approaches from the formal methods community can be applied fruitfully within the systems biology domain. The results can ...
Nicola Bonzanni, K. Anton Feenstra, Wan Fokkink, E...
SAC
2010
ACM
14 years 5 months ago
Web-based graphical querying of databases through an ontology: the Wonder system
Biological scientists have made large amounts of data available on the Web, which can be accessed by canned or precomputed queries presented via web forms. To satisfy further info...
Diego Calvanese, C. Maria Keet, Werner Nutt, Maria...
SIGMOD
2005
ACM
99views Database» more  SIGMOD 2005»
14 years 11 months ago
WOODSS and the Web: annotating and reusing scientific workflows
This paper discusses ongoing research on scientific workflows at the Institute of Computing, University of Campinas (IC - UNICAMP) Brazil. Our projects with bio-scientists have le...
Claudia Bauzer Medeiros, José de Jesús Pérez Al...
BMCBI
2006
122views more  BMCBI 2006»
13 years 11 months ago
BioMoby extensions to the Taverna workflow management and enactment software
Background: As biology becomes an increasingly computational science, it is critical that we develop software tools that support not only bioinformaticians, but also bench biologi...
Edward A. Kawas, Martin Senger, Mark D. Wilkinson