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CORR
2010
Springer
105views Education» more  CORR 2010»
13 years 7 months ago
On Designing Multicore-aware Simulators for Biological Systems
The stochastic simulation of biological systems is an increasingly popular technique in bioinformatics. It often is an enlightening technique, which may however result in being com...
Marco Aldinucci, Mario Coppo, Ferruccio Damiani, M...
SPIESR
2004
167views Database» more  SPIESR 2004»
13 years 11 months ago
BioMedia: multimedia information systems for biology research, education, and collaboration
The long-term goals of the recently started Biomedia project at SFSU are to provide multimedia information systems and applications for the research and education needs of several...
E. Lank, Dragutin Petkovic, F. A. Ramirez-Weber, J...
BMCBI
2007
215views more  BMCBI 2007»
13 years 10 months ago
Learning causal networks from systems biology time course data: an effective model selection procedure for the vector autoregres
Background: Causal networks based on the vector autoregressive (VAR) process are a promising statistical tool for modeling regulatory interactions in a cell. However, learning the...
Rainer Opgen-Rhein, Korbinian Strimmer
ICLP
2010
Springer
14 years 1 months ago
A Logical Paradigm for Systems Biology (Invited Talk)
[6]. An SBML model can be interpreted in Biocham at three abstraction levels: • the Boolean semantics (asynchronuous Boolean state transitions on the presence/absence of molecule...
François Fages
VRML
2004
ACM
14 years 3 months ago
PathSim visualizer: an Information-Rich Virtual Environment framework for systems biology
Increasingly, biology researchers and medical practitioners are using computational tools to model and analyze dynamic systems across scales from the macro to the cellular to the ...
Nicholas F. Polys, Doug A. Bowman, Chris North, Re...