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BMCBI
2010
83views more  BMCBI 2010»
13 years 7 months ago
Trees on networks: resolving statistical patterns of phylogenetic similarities among interacting proteins
Background: Phylogenies capture the evolutionary ancestry linking extant species. Correlations and similarities among a set of species are mediated by and need to be understood in...
William P. Kelly, Michael P. H. Stumpf
VISSYM
2004
13 years 9 months ago
Visual Triangulation of Network-Based Phylogenetic Trees
Phylogenetic trees are built by examining differences in the biological traits of a set of species. An example of such a trait is a biological network such as a metabolic pathway,...
Ulrik Brandes, Tim Dwyer, Falk Schreiber
BMCBI
2008
96views more  BMCBI 2008»
13 years 7 months ago
SBML-SAT: a systems biology markup language (SBML) based sensitivity analysis tool
Zhike Zi, Yanan Zheng, Ann E. Rundell, Edda Klipp
SIGMOD
2008
ACM
215views Database» more  SIGMOD 2008»
14 years 7 months ago
CSV: visualizing and mining cohesive subgraphs
Extracting dense sub-components from graphs efficiently is an important objective in a wide range of application domains ranging from social network analysis to biological network...
Nan Wang, Srinivasan Parthasarathy, Kian-Lee Tan, ...
BMCBI
2006
178views more  BMCBI 2006»
13 years 7 months ago
GOLEM: an interactive graph-based gene-ontology navigation and analysis tool
Background: The Gene Ontology has become an extremely useful tool for the analysis of genomic data and structuring of biological knowledge. Several excellent software tools for na...
Rachel S. G. Sealfon, Matthew A. Hibbs, Curtis Hut...