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BMCBI
2008
100views more  BMCBI 2008»
13 years 9 months ago
PatternLab for proteomics: a tool for differential shotgun proteomics
Background: A goal of proteomics is to distinguish between states of a biological system by identifying protein expression differences. Liu et al. demonstrated a method to perform...
Paulo C. Carvalho, Juliana S. G. Fischer, Emily I....
APVIS
2009
13 years 10 months ago
Visual support for the understanding of simulation processes
Current visualization systems are typically based on the concept of interactive post-processing. This decoupling of data visualization from the process of data generation offers a...
Andrea Unger, Heidrun Schumann
BMCBI
2006
180views more  BMCBI 2006»
13 years 9 months ago
The Gaggle: An open-source software system for integrating bioinformatics software and data sources
Background: Systems biologists work with many kinds of data, from many different sources, using a variety of software tools. Each of these tools typically excels at one type of an...
Paul T. Shannon, David J. Reiss, Richard Bonneau, ...
BMCBI
2010
191views more  BMCBI 2010»
13 years 9 months ago
BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions
Background: Genome-scale metabolic reconstructions under the Constraint Based Reconstruction and Analysis (COBRA) framework are valuable tools for analyzing the metabolic capabili...
Jan Schellenberger, Junyoung O. Park, Tom M. Conra...
VIZSEC
2005
Springer
14 years 2 months ago
A User-centered Look at Glyph-based Security Visualization
This paper presents the Intrusion Detection toolkit (IDtk), an information Visualization tool for intrusion detection (ID). IDtk was developed through a user-centered design proce...
Anita Komlodi, Penny Rheingans, Utkarsha Ayachit, ...