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BMCBI
2008
139views more  BMCBI 2008»
13 years 10 months ago
New challenges for text mining: mapping between text and manually curated pathways
Background: Associating literature with pathways poses new challenges to the Text Mining (TM) community. There are three main challenges to this task: (1) the identification of th...
Kanae Oda, Jin-Dong Kim, Tomoko Ohta, Daisuke Okan...
NLDB
2010
Springer
13 years 7 months ago
Sense-Based Biomedical Indexing and Retrieval
This paper tackles the problem of term ambiguity, especially for biomedical literature. We propose and evaluate two methods of Word Sense Disambiguation (WSD) for biomedical terms ...
Ba-duy Dinh, Lynda Tamine
GCB
2004
Springer
81views Biometrics» more  GCB 2004»
14 years 3 months ago
GoPubMed: ontology-based literature search applied to Gene Ontology and PubMed
Abstract. The biomedical literature grows at a tremendous rate, so that finding the relevant literature is becoming more and more difficult. To address this problem we introduce ...
Ralph Delfs, Andreas Doms, Alexander Kozlenkov, Mi...
CORR
2010
Springer
83views Education» more  CORR 2010»
13 years 10 months ago
Sentence Simplification Aids Protein-Protein Interaction Extraction
Accurate systems for extracting ProteinProtein Interactions (PPIs) automatically from biomedical articles can help accelerate biomedical research. Biomedical Informatics researche...
Siddhartha Jonnalagadda, Graciela Gonzalez
BMCBI
2005
155views more  BMCBI 2005»
13 years 9 months ago
Mining protein function from text using term-based support vector machines
Background: Text mining has spurred huge interest in the domain of biology. The goal of the BioCreAtIvE exercise was to evaluate the performance of current text mining systems. We...
Simon B. Rice, Goran Nenadic, Benjamin J. Stapley