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BMCBI
2006
159views more  BMCBI 2006»
13 years 10 months ago
EpiJen: a server for multistep T cell epitope prediction
Background: The main processing pathway for MHC class I ligands involves degradation of proteins by the proteasome, followed by transport of products by the transporter associated...
Irini A. Doytchinova, Pingping Guan, Darren R. Flo...
BMCBI
2007
136views more  BMCBI 2007»
13 years 10 months ago
Prediction of tissue-specific cis-regulatory modules using Bayesian networks and regression trees
Background: In vertebrates, a large part of gene transcriptional regulation is operated by cisregulatory modules. These modules are believed to be regulating much of the tissue-sp...
Xiaoyu Chen, Mathieu Blanchette
BMCBI
2007
105views more  BMCBI 2007»
13 years 10 months ago
Finding regulatory elements and regulatory motifs: a general probabilistic framework
Over the last two decades a large number of algorithms has been developed for regulatory motif finding. Here we show how many of these algorithms, especially those that model bind...
Erik van Nimwegen
CN
2007
116views more  CN 2007»
13 years 10 months ago
Scalability and security in biased many-to-one communication
In multicast communication, a source transmits the same content to a set of receivers. Current protocols for multicast follow a tree communication model which makes them scalable....
Francesc Sebé, Josep Domingo-Ferrer
COMBINATORICA
2007
129views more  COMBINATORICA 2007»
13 years 10 months ago
Birth control for giants
The standard Erd˝os-Renyi model of random graphs begins with n isolated vertices, and at each round a random edge is added. Parametrizing n 2 rounds as one time unit, a phase tra...
Joel H. Spencer, Nicholas C. Wormald