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BMCBI
2008
130views more  BMCBI 2008»
13 years 7 months ago
Structural descriptor database: a new tool for sequence-based functional site prediction
Background: The Structural Descriptor Database (SDDB) is a web-based tool that predicts the function of proteins and functional site positions based on the structural properties o...
Juliana S. Bernardes, Jorge H. Fernandez, Ana Tere...
BMCBI
2005
106views more  BMCBI 2005»
13 years 7 months ago
SIMPROT: Using an empirically determined indel distribution in simulations of protein evolution
Background: General protein evolution models help determine the baseline expectations for the evolution of sequences, and they have been extensively useful in sequence analysis an...
Andy Pang, Andrew D. Smith, Paulo A. S. Nuin, Elis...
BMCBI
2002
133views more  BMCBI 2002»
13 years 7 months ago
Identification and characterization of subfamily-specific signatures in a large protein superfamily by a hidden Markov model app
Background: Most profile and motif databases strive to classify protein sequences into a broad spectrum of protein families. The next step of such database studies should include ...
Kevin Truong, Mitsuhiko Ikura
ICSE
2009
IEEE-ACM
14 years 8 months ago
Analyzing critical process models through behavior model synthesis
Process models capture tasks performed by agents together with their control flow. Building and analyzing such models is important but difficult in certain areas such as safety-cr...
Christophe Damas, Bernard Lambeau, Francois Roucou...
SIGSOFT
2007
ACM
14 years 8 months ago
Object and reference immutability using java generics
A compiler-checked immutability guarantee provides useful documentation, facilitates reasoning, and enables optimizations. This paper presents Immutability Generic Java (IGJ), a n...
Yoav Zibin, Alex Potanin, Mahmood Ali, Shay Artzi,...