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» CLUSEQ: Efficient and Effective Sequence Clustering
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BMCBI
2007
177views more  BMCBI 2007»
13 years 11 months ago
The BioPrompt-box: an ontology-based clustering tool for searching in biological databases
Background: High-throughput molecular biology provides new data at an incredible rate, so that the increase in the size of biological databanks is enormous and very rapid. This sc...
Claudio Corsi, Paolo Ferragina, Roberto Marangoni
KDD
2008
ACM
115views Data Mining» more  KDD 2008»
14 years 11 months ago
SPIRAL: efficient and exact model identification for hidden Markov models
Hidden Markov models (HMMs) have received considerable attention in various communities (e.g, speech recognition, neurology and bioinformatic) since many applications that use HMM...
Yasuhiro Fujiwara, Yasushi Sakurai, Masashi Yamamu...
BMCBI
2006
101views more  BMCBI 2006»
13 years 11 months ago
How repetitive are genomes?
Background: Genome sequences vary strongly in their repetitiveness and the causes for this are still debated. Here we propose a novel measure of genome repetitiveness, the index o...
Bernhard Haubold, Thomas Wiehe
BMCBI
2006
117views more  BMCBI 2006»
13 years 11 months ago
G-InforBIO: integrated system for microbial genomics
Background: Genome databases contain diverse kinds of information, including gene annotations and nucleotide and amino acid sequences. It is not easy to integrate such information...
Naoto Tanaka, Takashi Abe, Satoru Miyazaki, Hideak...
DATAMINE
2006
142views more  DATAMINE 2006»
13 years 11 months ago
Sequential Pattern Mining in Multi-Databases via Multiple Alignment
To efficiently find global patterns from a multi-database, information in each local database must first be mined and summarized at the local level. Then only the summarized infor...
Hye-Chung Kum, Joong Hyuk Chang, Wei Wang 0010