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EVOW
2007
Springer
14 years 1 months ago
Modeling the Shoot Apical Meristem in A. thaliana : Parameter Estimation for Spatial Pattern Formation
Understanding the self-regulatory mechanisms controlling the spatial and temporal structure of multicellular organisms represents one of the major challenges in molecular biology. ...
Tim Hohm, Eckart Zitzler
GECCO
1999
Springer
142views Optimization» more  GECCO 1999»
13 years 11 months ago
Towards Byte Code Genetic Programming
This paper uses the GP paradigm to evolve linear genotypes (individuals) that consist of Java byte code. Our prototype GP system is implemented in Java using a standard Java devel...
Brad Harvey, James A. Foster, Deborah A. Frincke
BMCBI
2006
122views more  BMCBI 2006»
13 years 7 months ago
Computational reconstruction of transcriptional regulatory modules of the yeast cell cycle
Background: A transcriptional regulatory module (TRM) is a set of genes that is regulated by a common set of transcription factors (TFs). By organizing the genome into TRMs, a liv...
Wei-Sheng Wu, Wen-Hsiung Li, Bor-Sen Chen
EH
2004
IEEE
102views Hardware» more  EH 2004»
13 years 11 months ago
Design Space Issues for Intrinsic Evolvable Hardware
This paper discusses the problem of increased programming time for intrinsic evolvable hardware (EHW) as the complexity of the circuit grows. We develop equations for the size of ...
James Hereford, David A. Gwaltney
BMCBI
2007
233views more  BMCBI 2007»
13 years 7 months ago
160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA)
Background: To infer homology and subsequently gene function, the Smith-Waterman (SW) algorithm is used to find the optimal local alignment between two sequences. When searching s...
Isaac T. S. Li, Warren Shum, Kevin Truong