Background: Next-generation sequencing technologies have led to the high-throughput production of sequence data (reads) at low cost. However, these reads are significantly shorter...
This paper discusses the implementation of a numerical algorithm for simulating incompressible fluid flows based on the finite difference method and designed for parallel compu...
Abstract. This article presents the C++ library vShark which reduces the intranode communication overhead of parallel programs on clusters of SMPs. The library is built on top of m...
To help programmers of high-performance computing (HPC) systems avoid communication-related errors, we employ a formal process algebra, Communicating Sequential Processes (CSP), w...
With the heavy reliance of modern scientific applications upon the MPI Standard, it has become critical for the implementation of MPI to be as capable and as fast as possible. Th...
Keith D. Underwood, K. Scott Hemmert, Arun Rodrigu...