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» Ch MPI: Interpretive Parallel Computing in C
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BMCBI
2011
13 years 4 months ago
DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI
Background: Next-generation sequencing technologies have led to the high-throughput production of sequence data (reads) at low cost. However, these reads are significantly shorter...
Yongchao Liu, Bertil Schmidt, Douglas L. Maskell
SBACPAD
2003
IEEE
138views Hardware» more  SBACPAD 2003»
14 years 3 months ago
Finite Difference Simulations of the Navier-Stokes Equations Using Parallel Distributed Computing
 This paper discusses the implementation of a numerical algorithm for simulating incompressible fluid flows based on the finite difference method and designed for parallel compu...
João Paulo De Angeli, Andréa M. P. V...
ISPA
2005
Springer
14 years 3 months ago
Reducing the Overhead of Intra-Node Communication in Clusters of SMPs
Abstract. This article presents the C++ library vShark which reduces the intranode communication overhead of parallel programs on clusters of SMPs. The library is built on top of m...
Sascha Hunold, Thomas Rauber
CCECE
2006
IEEE
14 years 3 months ago
A Formal CSP Framework for Message-Passing HPC Programming
To help programmers of high-performance computing (HPC) systems avoid communication-related errors, we employ a formal process algebra, Communicating Sequential Processes (CSP), w...
John D. Carter, William B. Gardner
IPPS
2005
IEEE
14 years 3 months ago
A Hardware Acceleration Unit for MPI Queue Processing
With the heavy reliance of modern scientific applications upon the MPI Standard, it has become critical for the implementation of MPI to be as capable and as fast as possible. Th...
Keith D. Underwood, K. Scott Hemmert, Arun Rodrigu...