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BMCBI
2006
116views more  BMCBI 2006»
13 years 7 months ago
Optimized mixed Markov models for motif identification
Background: Identifying functional elements, such as transcriptional factor binding sites, is a fundamental step in reconstructing gene regulatory networks and remains a challengi...
Weichun Huang, David M. Umbach, Uwe Ohler, Leping ...
CORR
2010
Springer
142views Education» more  CORR 2010»
13 years 6 months ago
HyperANF: Approximating the Neighbourhood Function of Very Large Graphs on a Budget
The neighbourhood function NG(t) of a graph G gives, for each t ∈ N, the number of pairs of nodes x, y such that y is reachable from x in less that t hops. The neighbourhood fun...
Paolo Boldi, Marco Rosa, Sebastiano Vigna
ICDE
2008
IEEE
190views Database» more  ICDE 2008»
14 years 8 months ago
Adaptive Segmentation for Scientific Databases
In this paper we explore database segmentation in the context of a column-store DBMS targeted at a scientific database. We present a novel hardware- and scheme-oblivious segmentati...
Milena Ivanova, Martin L. Kersten, Niels Nes
KDD
2007
ACM
227views Data Mining» more  KDD 2007»
14 years 7 months ago
Fast best-effort pattern matching in large attributed graphs
We focus on large graphs where nodes have attributes, such as a social network where the nodes are labelled with each person's job title. In such a setting, we want to find s...
Hanghang Tong, Christos Faloutsos, Brian Gallagher...
HPCA
2007
IEEE
14 years 7 months ago
Extending Multicore Architectures to Exploit Hybrid Parallelism in Single-thread Applications
Chip multiprocessors with multiple simpler cores are gaining popularity because they have the potential to drive future performance gains without exacerbating the problems of powe...
Hongtao Zhong, Steven A. Lieberman, Scott A. Mahlk...