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RECOMB
2004
Springer
14 years 8 months ago
Modeling and Analysis of Heterogeneous Regulation in Biological Networks
Abstract. In this study we propose a novel model for the representation of biological networks and provide algorithms for learning model parameters from experimental data. Our appr...
Irit Gat-Viks, Amos Tanay, Ron Shamir
STOC
2007
ACM
239views Algorithms» more  STOC 2007»
14 years 8 months ago
Approximating minimum bounded degree spanning trees to within one of optimal
In the MINIMUM BOUNDED DEGREE SPANNING TREE problem, we are given an undirected graph with a degree upper bound Bv on each vertex v, and the task is to find a spanning tree of min...
Mohit Singh, Lap Chi Lau
STOC
2007
ACM
146views Algorithms» more  STOC 2007»
14 years 8 months ago
Playing games with approximation algorithms
In an online linear optimization problem, on each period t, an online algorithm chooses st S from a fixed (possibly infinite) set S of feasible decisions. Nature (who may be adve...
Sham M. Kakade, Adam Tauman Kalai, Katrina Ligett
STOC
2006
ACM
129views Algorithms» more  STOC 2006»
14 years 8 months ago
Optimal phylogenetic reconstruction
One of the major tasks of evolutionary biology is the reconstruction of phylogenetic trees from molecular data. The evolutionary model is given by a Markov chain on the true evolu...
Constantinos Daskalakis, Elchanan Mossel, Sé...
STOC
2004
ACM
157views Algorithms» more  STOC 2004»
14 years 8 months ago
Derandomizing homomorphism testing in general groups
The main result of this paper is a near-optimal derandomization of the affine homomorphism test of Blum, Luby and Rubinfeld (Journal of Computer and System Sciences, 1993). We sho...
Amir Shpilka, Avi Wigderson