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USS
2010
13 years 6 months ago
BotGrep: Finding P2P Bots with Structured Graph Analysis
A key feature that distinguishes modern botnets from earlier counterparts is their increasing use of structured overlay topologies. This lets them carry out sophisticated coordina...
Shishir Nagaraja, Prateek Mittal, Chi-Yao Hong, Ma...
SDM
2009
SIAM
180views Data Mining» more  SDM 2009»
14 years 6 months ago
Structure and Dynamics of Research Collaboration in Computer Science.
Complex systems exhibit emergent patterns of behavior at different levels of organization. Powerful network analysis methods, developed in physics and social sciences, have been s...
Andre Nash, Christian Bird, Earl T. Barr, Premkuma...
BMCBI
2004
90views more  BMCBI 2004»
13 years 8 months ago
Statistical monitoring of weak spots for improvement of normalization and ratio estimates in microarrays
Background: Several aspects of microarray data analysis are dependent on identification of genes expressed at or near the limits of detection. For example, regression-based normal...
Igor Dozmorov, Nicholas Knowlton, Yuhong Tang, Mic...
BMCBI
2010
147views more  BMCBI 2010»
13 years 9 months ago
baySeq: Empirical Bayesian methods for identifying differential expression in sequence count data
Background: High throughput sequencing has become an important technology for studying expression levels in many types of genomic, and particularly transcriptomic, data. One key w...
Thomas J. Hardcastle, Krystyna A. Kelly
BMCBI
2006
119views more  BMCBI 2006»
13 years 8 months ago
LS-NMF: A modified non-negative matrix factorization algorithm utilizing uncertainty estimates
Background: Non-negative matrix factorisation (NMF), a machine learning algorithm, has been applied to the analysis of microarray data. A key feature of NMF is the ability to iden...
Guoli Wang, Andrew V. Kossenkov, Michael F. Ochs