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ISMB
1994
13 years 8 months ago
An Efficient Method for Multiple Sequence Alignment
Multiple sequence alignment has been a useful methodin the study of molecular evolution and sequence-structure relationships. This paper presents a newmethodfor multiple sequence ...
Jin Kim, Sakti Pramanik
BMCBI
2010
134views more  BMCBI 2010»
13 years 7 months ago
BayesMotif: de novo protein sorting motif discovery from impure datasets
Background: Protein sorting is the process that newly synthesized proteins are transported to their target locations within or outside of the cell. This process is precisely regul...
Jianjun Hu, Fan Zhang
MIA
2010
104views more  MIA 2010»
13 years 2 months ago
Combining atlas based segmentation and intensity classification with nearest neighbor transform and accuracy weighted vote
In this paper, different methods to improve atlas based segmentation are presented. The first technique is a new mapping of the labels of an atlas consistent with a given intensit...
Michaël Sdika
BMCBI
2007
139views more  BMCBI 2007»
13 years 7 months ago
XSTREAM: A practical algorithm for identification and architecture modeling of tandem repeats in protein sequences
Background: Biological sequence repeats arranged in tandem patterns are widespread in DNA and proteins. While many software tools have been designed to detect DNA tandem repeats (...
Aaron M. Newman, James B. Cooper
BIOINFORMATICS
2005
71views more  BIOINFORMATICS 2005»
13 years 7 months ago
Semi-supervised protein classification using cluster kernels
A key issue in supervised protein classification is the representation of input sequences of amino acids. Recent work using string kernels for protein data has achieved state-of-t...
Jason Weston, Christina S. Leslie, Eugene Ie, Deng...