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» Cluster Computing: A High-Performance Contender
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CLUSTER
2003
IEEE
14 years 4 months ago
A Performance Monitor Based on Virtual Global Time for Clusters of PCs
Debugging the performance of parallel and distributed systems remains a difficult task despite the widespread use of middleware packages for automatic distribution, communication...
Michela Taufer, Thomas Stricker
SC
2009
ACM
14 years 5 months ago
Early performance evaluation of a "Nehalem" cluster using scientific and engineering applications
In this paper, we present an early performance evaluation of a 624-core cluster based on the Intel® Xeon® Processor 5560 (code named “Nehalem-EP”, and referred to as Xeon 55...
Subhash Saini, Andrey Naraikin, Rupak Biswas, Davi...
CLUSTER
2006
IEEE
14 years 5 months ago
A Simple Synchronous Distributed-Memory Algorithm for the HPCC RandomAccess Benchmark
The RandomAccess benchmark as defined by the High Performance Computing Challenge (HPCC) tests the speed at which a machine can update the elements of a table spread across globa...
Steven J. Plimpton, Ron Brightwell, Courtenay Vaug...
BMCBI
2006
161views more  BMCBI 2006»
13 years 11 months ago
A novel approach to phylogenetic tree construction using stochastic optimization and clustering
Background: The problem of inferring the evolutionary history and constructing the phylogenetic tree with high performance has become one of the major problems in computational bi...
Ling Qin, Yixin Chen, Yi Pan, Ling Chen
CIBCB
2007
IEEE
14 years 2 months ago
Hybrid Architecture for Accelerating DNA Codeword Library Searching
-- A large and reliable DNA codeword library is the key to the success of DNA based computing. Searching for the set of reliable DNA codewords is an NP-hard problem, which can take...
Qinru Qiu, Daniel J. Burns, Qing Wu, Prakash Mukre