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BMCBI
2007
133views more  BMCBI 2007»
13 years 8 months ago
MATLIGN: a motif clustering, comparison and matching tool
Background: Sequence motifs representing transcription factor binding sites (TFBS) are commonly encoded as position frequency matrices (PFM) or degenerate consensus sequences (CS)...
Matti Kankainen, Ari Löytynoja
ALGORITHMICA
2006
86views more  ALGORITHMICA 2006»
13 years 8 months ago
Slabpose Columnsort: A New Oblivious Algorithm for Out-of-Core Sorting on Distributed-Memory Clusters
Our goal is to develop a robust out-of-core sorting program for a distributed-memory cluster. The literature contains two dominant paradigms for out-of-core sorting algorithms: me...
Geeta Chaudhry, Thomas H. Cormen
ADHOC
2005
95views more  ADHOC 2005»
13 years 7 months ago
Planar graph routing on geographical clusters
Geographic routing protocols base their forwarding decisions on the location of the current device, its neighbors, and the packets destination. Early proposed heuristic greedy rou...
Hannes Frey, Daniel Görgen
ICSM
2009
IEEE
13 years 5 months ago
Decomposing object-oriented class modules using an agglomerative clustering technique
Software can be considered a live entity, as it undergoes many alterations throughout its lifecycle. Furthermore, developers do not usually retain a good design in favor of adding...
Marios Fokaefs, Nikolaos Tsantalis, Alexander Chat...
ICTAI
2009
IEEE
13 years 5 months ago
A Generalized Cyclic-Clustering Approach for Solving Structured CSPs
We propose a new method for solving structured CSPs which generalizes and improves the Cyclic-Clustering approach [4]. First, the cutset and the tree-decomposition of the constrai...
Cédric Pinto, Cyril Terrioux