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BMCBI
2007
133views more  BMCBI 2007»
13 years 10 months ago
MATLIGN: a motif clustering, comparison and matching tool
Background: Sequence motifs representing transcription factor binding sites (TFBS) are commonly encoded as position frequency matrices (PFM) or degenerate consensus sequences (CS)...
Matti Kankainen, Ari Löytynoja
TALG
2010
158views more  TALG 2010»
13 years 4 months ago
Clustering for metric and nonmetric distance measures
We study a generalization of the k-median problem with respect to an arbitrary dissimilarity measure D. Given a finite set P of size n, our goal is to find a set C of size k such t...
Marcel R. Ackermann, Johannes Blömer, Christi...
IPM
2007
156views more  IPM 2007»
13 years 10 months ago
p2pDating: Real life inspired semantic overlay networks for Web search
We consider a network of autonomous peers forming a logically global but physically distributed search engine, where every peer has its own local collection generated by independe...
Josiane Xavier Parreira, Sebastian Michel, Gerhard...
CSB
2005
IEEE
118views Bioinformatics» more  CSB 2005»
14 years 3 months ago
Gene Teams with Relaxed Proximity Constraint
Functionally related genes co-evolve, probably due to the strong selection pressure in evolution. Thus we expect that they are present in multiple genomes. Physical proximity amon...
Sun Kim, Jeong-Hyeon Choi, Jiong Yang
ERCIMDL
1997
Springer
106views Education» more  ERCIMDL 1997»
14 years 2 months ago
Scalable Text Retrieval for Large Digital Libraries
It is argued that digital libraries of the future will contain terabyte-scale collections of digital text and that full-text searching techniques will be required to operate over c...
David Hawking