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BMCBI
2008
110views more  BMCBI 2008»
13 years 7 months ago
Predikin and PredikinDB: a computational framework for the prediction of protein kinase peptide specificity and an associated da
Background: We have previously described an approach to predicting the substrate specificity of serine-threonine protein kinases. The method, named Predikin, identifies key conser...
Neil F. W. Saunders, Ross I. Brinkworth, Thomas Hu...
BMCBI
2007
134views more  BMCBI 2007»
13 years 7 months ago
Nearest Neighbor Networks: clustering expression data based on gene neighborhoods
Background: The availability of microarrays measuring thousands of genes simultaneously across hundreds of biological conditions represents an opportunity to understand both indiv...
Curtis Huttenhower, Avi I. Flamholz, Jessica N. La...
CAV
2007
Springer
104views Hardware» more  CAV 2007»
14 years 1 months ago
Revamping TVLA: Making Parametric Shape Analysis Competitive
Abstract. TVLA is a parametric framework for shape analysis that can be easily instantiated to create different kinds of analyzers for checking properties of programs that use link...
Igor Bogudlov, Tal Lev-Ami, Thomas W. Reps, Mooly ...
BMCBI
2006
127views more  BMCBI 2006»
13 years 7 months ago
A graph-search framework for associating gene identifiers with documents
Background: One step in the model organism database curation process is to find, for each article, the identifier of every gene discussed in the article. We consider a relaxation ...
William W. Cohen, Einat Minkov
SIGMOD
2009
ACM
177views Database» more  SIGMOD 2009»
14 years 8 months ago
Exploiting context analysis for combining multiple entity resolution systems
Entity Resolution (ER) is an important real world problem that has attracted significant research interest over the past few years. It deals with determining which object descript...
Zhaoqi Chen, Dmitri V. Kalashnikov, Sharad Mehrotr...