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BMCBI
2007
106views more  BMCBI 2007»
13 years 7 months ago
Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach
Background: Selenocysteine and pyrrolysine are the 21st and 22nd amino acids, which are genetically encoded by stop codons. Since a number of microbial genomes have been completel...
Masashi Fujita, Hisaaki Mihara, Susumu Goto, Nobuy...
BIOINFORMATICS
2010
139views more  BIOINFORMATICS 2010»
13 years 7 months ago
adephylo: new tools for investigating the phylogenetic signal in biological traits
Summary: adephylo is a package for the R software dedicated to the analysis of comparative evolutionary data. Phylogenetic comparative methods initially aimed at accounting for or...
Thibaut Jombart, François Balloux, St&eacut...
ALMOB
2007
129views more  ALMOB 2007»
13 years 7 months ago
Consistency of the Neighbor-Net Algorithm
Background: Neighbor-Net is a novel method for phylogenetic analysis that is currently being widely used in areas such as virology, bacteriology, and plant evolution. Given an inp...
David Bryant, Vincent Moulton, Andreas Spillner
CORR
2007
Springer
76views Education» more  CORR 2007»
13 years 7 months ago
Tripartitions do not always discriminate phylogenetic networks
Phylogenetic networks are a generalization of phylogenetic trees that allow for the representation of non-treelike evolutionary events, like recombination, hybridization, or later...
Gabriel Cardona, Francesc Rosselló, Gabriel...
ISAAC
2005
Springer
113views Algorithms» more  ISAAC 2005»
14 years 17 days ago
Fast Algorithms for Computing the Tripartition-Based Distance Between Phylogenetic Networks
Consider two phylogenetic networks N and N′ of size n. The tripartition-based distance finds the proportion of tripartitions which are not shared by N and N′ . This distance i...
Nguyen Bao Nguyen, C. Thach Nguyen, Wing-Kin Sung