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HPDC
2010
IEEE
13 years 10 months ago
LogGOPSim: simulating large-scale applications in the LogGOPS model
We introduce LogGOPSim--a fast simulation framework for parallel algorithms at large-scale. LogGOPSim utilizes a slightly extended version of the well-known LogGPS model in combin...
Torsten Hoefler, Timo Schneider, Andrew Lumsdaine
SIGOPS
2008
123views more  SIGOPS 2008»
13 years 9 months ago
Comparative evaluation of overlap strategies with study of I/O overlap in MPI-IO
Many scientific applications use parallel I/O to meet the low latency and high bandwidth I/O requirement. Among many available parallel I/O operations, collective I/O is one of th...
Christina M. Patrick, Seung Woo Son, Mahmut T. Kan...
VLDB
2005
ACM
93views Database» more  VLDB 2005»
14 years 2 months ago
Indexing Mixed Types for Approximate Retrieval
In various applications such as data cleansing, being able to retrieve categorical or numerical attributes based on notions of approximate match (e.g., edit distance, numerical di...
Liang Jin, Nick Koudas, Chen Li, Anthony K. H. Tun...
BMCBI
2006
160views more  BMCBI 2006»
13 years 9 months ago
Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources
Background: In order to improve gene prediction, extrinsic evidence on the gene structure can be collected from various sources of information such as genome-genome comparisons an...
Mario Stanke, Oliver Schöffmann, Burkhard Mor...
BMCBI
2002
120views more  BMCBI 2002»
13 years 9 months ago
tacg - a grep for DNA
Background: Pattern matching is the core of bioinformatics; it is used in database searching, restriction enzyme mapping, and finding open reading frames. It is done repeatedly ov...
Harry Mangalam