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ISAAC
2009
Springer
147views Algorithms» more  ISAAC 2009»
14 years 2 months ago
Computing a Smallest Multi-labeled Phylogenetic Tree from Rooted Triplets
Abstract. We investigate the computational complexity of a new combinatorial problem of inferring a smallest possible multi-labeled phylogenetic tree (MUL tree) which is consistent...
Sylvain Guillemot, Jesper Jansson, Wing-Kin Sung
CPAIOR
2007
Springer
14 years 2 months ago
Best-First AND/OR Search for 0/1 Integer Programming
Abstract. AND/OR search spaces are a unifying paradigm for advanced algorithmic schemes for graphical models. The main virtue of this representation is its sensitivity to the struc...
Radu Marinescu 0002, Rina Dechter
WABI
2007
Springer
110views Bioinformatics» more  WABI 2007»
14 years 2 months ago
Haplotype Inference Via Hierarchical Genotype Parsing
The within-species genetic variation due to recombinations leads to a mosaic-like structure of DNA. This structure can be modeled, e.g. by parsing sample sequences of current DNA w...
Pasi Rastas, Esko Ukkonen
FOCS
2005
IEEE
14 years 1 months ago
Mechanism Design via Machine Learning
We use techniques from sample-complexity in machine learning to reduce problems of incentive-compatible mechanism design to standard algorithmic questions, for a wide variety of r...
Maria-Florina Balcan, Avrim Blum, Jason D. Hartlin...
COMPGEOM
2005
ACM
13 years 10 months ago
Dynamic maintenance of molecular surfaces under conformational changes
We present an efficient algorithm for maintaining the boundary and surface area of protein molecules as they undergo conformational changes. We also describe a robust implementati...
Eran Eyal, Dan Halperin