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    » Combinatorics of RNA Secondary Structures
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    JCO
    2007
    149views more  JCO 2007»
    A 2-approximation for the preceding-and-crossing structured 2-interval pattern problem
    13 years 8 months ago
    A 2-approximation for the preceding-and-crossing structured 2-interval pattern problem
    Download  digital.cs.usu.edu
    The 2-interval pattern problem over its various models and restrictions was proposed by Vialette (2004) for the application of RNA secondary structure prediction. We present an O(n...
    Minghui Jiang
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    BMCBI
    2002
    108views more  BMCBI 2002»
    A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
    13 years 8 months ago
    A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
    Download  www.biomedcentral.com
    Background: Covariance models (CMs) are probabilistic models of RNA secondary structure, analogous to profile hidden Markov models of linear sequence. The dynamic programming algo...
    Sean R. Eddy
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    NAR
    2008
    101views more  NAR 2008»
    RNALogo: a new approach to display structural RNA alignment
    13 years 7 months ago
    RNALogo: a new approach to display structural RNA alignment
    Download  regrna.mbc.nctu.edu.tw
    Regulatory RNAs play essential roles in many essential biological processes, ranging from gene regulation to protein synthesis. This work presents a web-based tool, RNALogo, to cr...
    Tzu-Hao Chang, Jorng-Tzong Horng, Hsien-Da Huang
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    COCOON
    2005
    Springer
    73views Combinatorics» more  COCOON 2005»
    RNA Multiple Structural Alignment with Longest Common Subsequences
    14 years 2 months ago
    RNA Multiple Structural Alignment with Longest Common Subsequences
    Download  www.cs.montana.edu
    Sergey Bereg, Binhai Zhu
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    CPM
    2009
    Springer
    114views Combinatorics» more  CPM 2009»
    Fast RNA Structure Alignment for Crossing Input Structures
    14 years 3 months ago
    Fast RNA Structure Alignment for Crossing Input Structures
    Download  www.wisdom.weizmann.ac.il
    Rolf Backofen, Gad M. Landau, Mathias Möhl, D...
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