Abstract. The Knuth-Morris-Pratt (KMP) pattern-matching algorithm guarantees both independence from alphabet size and worst-case execution time linear in the pattern length; on the...
Frantisek Franek, Christopher G. Jennings, William...
We present a new index for approximate string matching. The index collects text q-samples, that is, disjoint text substrings of length q, at fixed intervals and stores their posi...
Gonzalo Navarro, Erkki Sutinen, Jani Tanninen, Jor...
This paper examines some of the rich structure of the syntenic distance model of evolutionary distance, introduced by Ferretti et al. (1996). The syntenic distance between two gen...
Abstract. A circular-arc model (C, A) is a circle C together with a collection A of arcs of C. If A satisfies the Helly Property then (C, A) is a Helly circular-arc model. A (Helly...
In sequencing by hybridization (SBH), one has to reconstruct a sequence from its l-long substrings. SBH was proposed as an alternative to gel-based DNA sequencing approaches, but ...
Amir Ben-Dor, Itsik Pe'er, Ron Shamir, Roded Shara...