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BMCBI
2010
147views more  BMCBI 2010»
13 years 7 months ago
Indirect two-sided relative ranking: a robust similarity measure for gene expression data
Background: There is a large amount of gene expression data that exists in the public domain. This data has been generated under a variety of experimental conditions. Unfortunatel...
Louis Licamele, Lise Getoor
BIB
2008
74views more  BIB 2008»
13 years 7 months ago
The relative value of operon predictions
For most organisms, computational operon predictions are the only source of genome-wide operon information. Operon prediction methods described in literature are based on (a combi...
Rutger W. W. Brouwer, Oscar P. Kuipers, Sacha A. F...
RECOMB
2003
Springer
14 years 7 months ago
Combining phylogenetic and hidden Markov models in biosequence analysis
A few models have appeared in recent years that consider not only the way substitutions occur through evolutionary history at each site of a genome, but also the way the process c...
Adam C. Siepel, David Haussler
ICTAI
2007
IEEE
14 years 1 months ago
Accurate Classification of SAGE Data Based on Frequent Patterns of Gene Expression
In this paper we present a method for classifying accurately SAGE (Serial Analysis of Gene Expression) data. The high dimensionality of the data, namely the large number of featur...
George Tzanis, Ioannis P. Vlahavas
BMCBI
2010
146views more  BMCBI 2010»
13 years 7 months ago
Revealing and avoiding bias in semantic similarity scores for protein pairs
Background: Semantic similarity scores for protein pairs are widely applied in functional genomic researches for finding functional clusters of proteins, predicting protein functi...
Jing Wang 0004, Xianxiao Zhou, Jing Zhu, Chenggui ...