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BMCBI
2005
152views more  BMCBI 2005»
13 years 10 months ago
Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER
Background: Profile hidden Markov model (HMM) techniques are among the most powerful methods for protein homology detection. Yet, the critical features for successful modelling ar...
Markus Wistrand, Erik L. L. Sonnhammer
ICCAD
1993
IEEE
139views Hardware» more  ICCAD 1993»
14 years 2 months ago
Hardware/software resolution of pipeline hazards in pipeline synthesis of instruction set processors
— One major problem in pipeline synthesis is the detection and resolution of pipeline hazards. In this paper we present a new solution to the problem in the domain of pipelined a...
Ing-Jer Huang, Alvin M. Despain
ISSRE
2006
IEEE
14 years 4 months ago
Call Stack Coverage for GUI Test-Suite Reduction
—Graphical user interfaces (GUIs) are used as front ends to most of today’s software applications. The event-driven nature of GUIs presents new challenges for testing. One impo...
Scott McMaster, Atif M. Memon
BMCBI
2008
98views more  BMCBI 2008»
13 years 10 months ago
Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios
Background: Illumina Infinium whole genome genotyping (WGG) arrays are increasingly being applied in cancer genomics to study gene copy number alterations and allele-specific aber...
Johan Staaf, Johan Vallon-Christersson, David Lind...
PLDI
2006
ACM
14 years 4 months ago
Free-Me: a static analysis for automatic individual object reclamation
Garbage collection has proven benefits, including fewer memoryrelated errors and reduced programmer effort. Garbage collection, however, trades space for time. It reclaims memory...
Samuel Z. Guyer, Kathryn S. McKinley, Daniel Framp...