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BMCBI
2007
165views more  BMCBI 2007»
13 years 9 months ago
Automatic reconstruction of a bacterial regulatory network using Natural Language Processing
Background: Manual curation of biological databases, an expensive and labor-intensive process, is essential for high quality integrated data. In this paper we report the implement...
Carlos Rodríguez Penagos, Heladia Salgado, ...
SAC
2003
ACM
14 years 2 months ago
Similar_Join: Extending DBMS with a Bio-specific Operator
Existing sequence comparison software applications lack automation, abstraction, performance, and flexibility. Users need a new way of studying and applying sequence comparisons i...
Jake Yue Chen, John V. Carlis
SDM
2009
SIAM
251views Data Mining» more  SDM 2009»
14 years 6 months ago
High Performance Parallel/Distributed Biclustering Using Barycenter Heuristic.
Biclustering refers to simultaneous clustering of objects and their features. Use of biclustering is gaining momentum in areas such as text mining, gene expression analysis and co...
Alok N. Choudhary, Arifa Nisar, Waseem Ahmad, Wei-...
ICDE
2005
IEEE
114views Database» more  ICDE 2005»
14 years 2 months ago
VAMANA - A Scalable Cost-Driven XPath Engine
¡ Several systems have recently been proposed for the evaluation of XPath expressions. However, none of these systems have demonstrated both scalability with large document sizes ...
Venkatesh Raghavan, Kurt W. Deschler, Elke A. Rund...
VLDB
2007
ACM
126views Database» more  VLDB 2007»
14 years 9 months ago
Querying Complex Structured Databases
Correctly generating a structured query (e.g., an XQuery or a SQL query) requires the user to have a full understanding of the database schema, which can be a daunting task. Alter...
Cong Yu, H. V. Jagadish