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197views
12 years 5 months ago
Convex non-negative matrix factorization for massive datasets
Non-negative matrix factorization (NMF) has become a standard tool in data mining, information retrieval, and signal processing. It is used to factorize a non-negative data matrix ...
C. Thurau, K. Kersting, M. Wahabzada, and C. Bauck...
BMCBI
2010
129views more  BMCBI 2010»
13 years 9 months ago
Uncovering packaging features of co-regulated modules based on human protein interaction and transcriptional regulatory networks
Background: Network co-regulated modules are believed to have the functionality of packaging multiple biological entities, and can thus be assumed to coordinate many biological fu...
Lina Chen, Hong Wang, Liangcai Zhang, Wan Li, Qian...
ICDE
2005
IEEE
134views Database» more  ICDE 2005»
14 years 2 months ago
Index Structures for Matching XML Twigs Using Relational Query Processors
Various index structures have been proposed to speed up the evaluation of XML path expressions. However, existing XML path indices suffer from at least one of three limitations: ...
Zhiyuan Chen, Johannes Gehrke, Flip Korn, Nick Kou...
ANSS
2006
IEEE
14 years 3 months ago
iSimBioSys: A Discrete Event Simulation Platform for 'in silico' study of biological systems
With the availability of huge databases cataloguing the various molecular “parts” of complex biological systems, researchers from multiple disciplines have focused on developi...
Samik Ghosh, Preetam Ghosh, Kalyan Basu, Sajal K. ...
BMCBI
2007
152views more  BMCBI 2007»
13 years 9 months ago
Bioinformatic identification of novel putative photoreceptor specific cis-elements
Background: Cell specific gene expression is largely regulated by different combinations of transcription factors that bind cis-elements in the upstream promoter sequence. However...
Charles G. Danko, Vera A. McIlvain, Maochun Qin, B...