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» Comparative analysis of biclustering algorithms
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ISCAS
2003
IEEE
131views Hardware» more  ISCAS 2003»
14 years 4 months ago
Process variation dimension reduction based on SVD
We propose an algorithm based on singular value decomposition (SVD) to reduce the number of process variation variables. With few process variation variables, fault simulation and...
Zhuo Li, Xiang Lu, Weiping Shi
WABI
2010
Springer
170views Bioinformatics» more  WABI 2010»
13 years 9 months ago
Haplotypes versus Genotypes on Pedigrees
Abstract. Genome sequencing will soon produce haplotype data for individuals. For pedigrees of related individuals, sequencing appears to be an attractive alternative to genotyping...
Bonnie Kirkpatrick
BMCBI
2010
151views more  BMCBI 2010»
13 years 11 months ago
Data reduction for spectral clustering to analyze high throughput flow cytometry data
Background: Recent biological discoveries have shown that clustering large datasets is essential for better understanding biology in many areas. Spectral clustering in particular ...
Habil Zare, Parisa Shooshtari, Arvind Gupta, Ryan ...
IPPS
2010
IEEE
13 years 8 months ago
Hybrid MPI/Pthreads parallelization of the RAxML phylogenetics code
Abstract--A hybrid MPI/Pthreads parallelization was implemented in the RAxML phylogenetics code. New MPI code was added to the existing Pthreads production code to exploit parallel...
Wayne Pfeiffer, Alexandros Stamatakis
BMCBI
2007
108views more  BMCBI 2007»
13 years 11 months ago
Computer-aided identification of polymorphism sets diagnostic for groups of bacterial and viral genetic variants
Background: Single nucleotide polymorphisms (SNPs) and genes that exhibit presence/absence variation have provided informative marker sets for bacterial and viral genotyping. Iden...
Erin P. Price, John Inman-Bamber, Venugopal Thiruv...