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» Comparative analysis of genetic algorithm implementations
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BMCBI
2005
147views more  BMCBI 2005»
13 years 7 months ago
Calibration of mass spectrometric peptide mass fingerprint data without specific external or internal calibrants
Background: Peptide Mass Fingerprinting (PMF) is a widely used mass spectrometry (MS) method of analysis of proteins and peptides. It relies on the comparison between experimental...
Witold E. Wolski, Maciej Lalowski, Peter Jungblut,...
BMCBI
2002
120views more  BMCBI 2002»
13 years 7 months ago
tacg - a grep for DNA
Background: Pattern matching is the core of bioinformatics; it is used in database searching, restriction enzyme mapping, and finding open reading frames. It is done repeatedly ov...
Harry Mangalam
ISSTA
2009
ACM
14 years 2 months ago
HAMPI: a solver for string constraints
Many automatic testing, analysis, and verification techniques for programs can be effectively reduced to a constraint-generation phase followed by a constraint-solving phase. Th...
Adam Kiezun, Vijay Ganesh, Philip J. Guo, Pieter H...
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BMCBI
2010
218views more  BMCBI 2010»
13 years 7 months ago
Fast multi-core based multimodal registration of 2D cross-sections and 3D datasets
Background: Solving bioinformatics tasks often requires extensive computational power. Recent trends in processor architecture combine multiple cores into a single chip to improve...
Michael Scharfe, Rainer Pielot, Falk Schreiber
IEEEPACT
2006
IEEE
14 years 1 months ago
An empirical evaluation of chains of recurrences for array dependence testing
Code restructuring compilers rely heavily on program analysis techniques to automatically detect data dependences between program statements. Dependences between statement instanc...
Johnnie Birch, Robert A. van Engelen, Kyle A. Gall...