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» Comparative evaluation of gene-set analysis methods
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BMCBI
2004
133views more  BMCBI 2004»
13 years 8 months ago
Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction
Background: RNA secondary structure prediction methods based on probabilistic modeling can be developed using stochastic context-free grammars (SCFGs). Such methods can readily co...
Robin D. Dowell, Sean R. Eddy
COMPSAC
2005
IEEE
14 years 2 months ago
An Empirical Performance Study for Validating a Performance Analysis Approach: PSIM
Performance analysis gains more attention in recent years by researchers who focus their study on the early software development stages to mitigate the risk of redesign as problem...
Jinchun Xia, Yujia Ge, Carl K. Chang
BMCBI
2006
120views more  BMCBI 2006»
13 years 8 months ago
A factor analysis model for functional genomics
Background: Expression array data are used to predict biological functions of uncharacterized genes by comparing their expression profiles to those of characterized genes. While b...
Rafal Kustra, Romy Shioda, Mu Zhu
ISSTA
2012
ACM
11 years 11 months ago
ViewPoints: differential string analysis for discovering client- and server-side input validation inconsistencies
Since web applications are easily accessible, and often store a large amount of sensitive user information, they are a common target for attackers. In particular, attacks that foc...
Muath Alkhalaf, Shauvik Roy Choudhary, Mattia Fazz...
BMCBI
2007
130views more  BMCBI 2007»
13 years 8 months ago
Reproducibility of microarray data: a further analysis of microarray quality control (MAQC) data
Background: Many researchers are concerned with the comparability and reliability of microarray gene expression data. Recent completion of the MicroArray Quality Control (MAQC) pr...
James J. Chen, Huey-miin Hsueh, Robert R. Delongch...