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114
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GCB
2006
Springer
119views Biometrics» more  GCB 2006»
15 years 7 months ago
Comparative Analysis of Cyclic Sequences: Viroids and other Small Circular RNAs
: The analysis of small circular sequences requires specialized tools. While the differences between linear and circular sequences can be neglected in the case of long molecules su...
Axel Mosig, Ivo L. Hofacker, Peter F. Stadler
PPAM
2007
Springer
15 years 10 months ago
Applying SIMD Approach to Whole Genome Comparison on Commodity Hardware
Abstract. Whole genome comparison compares (aligns) two genome sequences assuming that analogous characteristics may be found. In this paper, we present an SIMD version of the Smit...
Arpith C. Jacob, Marcin Paprzycki, Maria Ganzha, S...
CORR
2010
Springer
120views Education» more  CORR 2010»
15 years 3 months ago
Modeling of 2D and 3D Assemblies Taking Into Account Form Errors of Plane Surfaces
The tolerancing process links the virtual and the real worlds. From the former, tolerances define a variational geometrical language (geometric parameters). From the latter, there...
Serge Samper, Pierre-Antoine Adragna, Hugues Favre...
RECOMB
2006
Springer
16 years 4 months ago
Sorting by Translocations Via Reversals Theory
Abstract. The understanding of genome rearrangements is an important endeavor in comparative genomics. A major computational problem in this field is finding a shortest sequence of...
Michal Ozery-Flato, Ron Shamir
113
Voted
ITNG
2007
IEEE
15 years 10 months ago
Sorting by Block-Interchanges and Signed Reversals
A block-interchange is a rearrangement event that exchanges two, not necessarily consecutive, contiguous regions in a genome, maintaining the original orientation. Signed reversal...
Cleber V. G. Mira, Joao Meidanis