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» Comparative genome assembly
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BMCBI
2007
99views more  BMCBI 2007»
15 years 3 months ago
Towards validating the hypothesis of phylogenetic profiling
Background: As the number of fully sequenced genome increases, the need is greater for bioinformatics to predict or annotate genes of a newly sequenced genome. Ever since Eisenber...
Raja Loganantharaj, Mazen Atwi
BMCBI
2007
154views more  BMCBI 2007»
15 years 4 months ago
Cinteny: flexible analysis and visualization of synteny and genome rearrangements in multiple organisms
Background: Identifying syntenic regions, i.e., blocks of genes or other markers with evolutionary conserved order, and quantifying evolutionary relatedness between genomes in ter...
Amit U. Sinha, Jaroslaw Meller
121
Voted
BMCBI
2007
86views more  BMCBI 2007»
15 years 4 months ago
Detecting microsatellites within genomes: significant variation among algorithms
Background: Microsatellites are short, tandemly-repeated DNA sequences which are widely distributed among genomes. Their structure, role and evolution can be analyzed based on exh...
Sébastien Leclercq, Eric Rivals, Philippe J...
SISAP
2008
IEEE
166views Data Mining» more  SISAP 2008»
15 years 10 months ago
Approximate Similarity Search in Genomic Sequence Databases Using Landmark-Guided Embedding
Similarity search in sequence databases is of paramount importance in bioinformatics research. As the size of the genomic databases increases, similarity search of proteins in the...
Ahmet Sacan, Ismail Hakki Toroslu
96
Voted
JBCB
2006
60views more  JBCB 2006»
15 years 3 months ago
Efficient Algorithms and Software for Detection of Full-length Ltr Retrotransposons
LTR retrotransposons constitute one of the most abundant classes of repetitive elements in eukaryotic genomes. In this paper, we present a new algorithm for detection of full-leng...
Anantharaman Kalyanaraman, Srinivas Aluru