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» Comparative modeling without implicit sequence alignments
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SGP
2003
13 years 10 months ago
Rotation Invariant Spherical Harmonic Representation of 3D Shape Descriptors
One of the challenges in 3D shape matching arises from the fact that in many applications, models should be considered to be the same if they differ by a rotation. Consequently, w...
Michael M. Kazhdan, Thomas A. Funkhouser, Szymon R...
BMCBI
2005
152views more  BMCBI 2005»
13 years 8 months ago
Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER
Background: Profile hidden Markov model (HMM) techniques are among the most powerful methods for protein homology detection. Yet, the critical features for successful modelling ar...
Markus Wistrand, Erik L. L. Sonnhammer
BMCBI
2011
13 years 3 months ago
Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
Background: The prediction of the structure of large RNAs remains a particular challenge in bioinformatics, due to the computational complexity and low levels of accuracy of state...
Zsuzsanna Sukosd, Bjarne Knudsen, Morten Vaerum, J...
RECOMB
2006
Springer
14 years 9 months ago
Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes
Micro-indels are small insertion or deletion events (indels) that occur during genome evolution. The study of micro-indels is important, both in order to better understand the unde...
Sagi Snir, Lior Pachter
ASIACRYPT
2007
Springer
14 years 2 months ago
Miniature CCA2 PK Encryption: Tight Security Without Redundancy
ersion of an extended abstract to be published in Advances in Cryptology—ASIACRYPT 2007, Springer-Verlag, 2007. Available online from: http://www.cs.stanford.edu/∼xb/asiacrypt0...
Xavier Boyen