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» Comparative modeling without implicit sequence alignments
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ICASSP
2007
IEEE
14 years 2 months ago
Evolutionary Sequence Modeling for Discovery of Peptide Hormones
There are currently a large number of ‘‘orphan’’ G-protein-coupled receptors (GPCRs) whose endogenous ligands (peptide hormones) are unknown. Identification of these pepti...
M. Kemal Sönmez, Lawrence Toll, Nina Zaveri
IROS
2009
IEEE
172views Robotics» more  IROS 2009»
14 years 3 months ago
Incremental polyphonic audio to score alignment using beat tracking for singer robots
— We aim at developing a singer robot capable of listening to music with its own “ears” and interacting with a human’s musical performance. Such a singer robot requires at ...
Takuma Otsuka, Toru Takahashi, Hiroshi G. Okuno, K...
VLSISP
2010
119views more  VLSISP 2010»
13 years 3 months ago
Hardware Acceleration of HMMER on FPGAs
We propose a new parallelization scheme for the hmmsearch function of the HMMER software, in order to target FPGA technology. hmmsearch is a very compute intensive software for bio...
Steven Derrien, Patrice Quinton
BMCBI
2010
129views more  BMCBI 2010»
13 years 8 months ago
Detection of distant evolutionary relationships between protein families using theory of sequence profile-profile comparison
Background: Detection of common evolutionary origin (homology) is a primary means of inferring protein structure and function. At present, comparison of protein families represent...
Mindaugas Margelevicius, Ceslovas Venclovas
COMAD
2008
13 years 10 months ago
REBMEC: Repeat Based Maximum Entropy Classifier for Biological Sequences
An important problem in biological data analysis is to predict the family of a newly discovered sequence like a protein or DNA sequence, using the collection of available sequence...
Pratibha Rani, Vikram Pudi