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» Comparative modeling without implicit sequence alignments
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BMCBI
2008
101views more  BMCBI 2008»
13 years 8 months ago
Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related
Background: For many types of analyses, data about gene structure and locations of non-coding regions of genes are required. Although a vast amount of genomic sequence data is ava...
Oliver Keller, Florian Odronitz, Mario Stanke, Mar...
CW
2008
IEEE
14 years 3 months ago
Automatic Surface Scanning of 3D Artifacts
—This paper describes an automatic 3D surface scanning technique using a 3D scanner. It allows the acquisition of a complete surface model of a 3D artifact without any manual reg...
Shiaofen Fang, Basil George, Mathew Palakal
BMCBI
2010
155views more  BMCBI 2010»
13 years 6 months ago
BrEPS: a flexible and automatic protocol to compute enzyme-specific sequence profiles for functional annotation
Background: Models for the simulation of metabolic networks require the accurate prediction of enzyme function. Based on a genomic sequence, enzymatic functions of gene products a...
Constantin Bannert, A. Welfle, C. aus dem Spring, ...
IPPS
2009
IEEE
14 years 3 months ago
Accelerating error correction in high-throughput short-read DNA sequencing data with CUDA
Emerging DNA sequencing technologies open up exciting new opportunities for genome sequencing by generating read data with a massive throughput. However, produced reads are signif...
Haixiang Shi, Bertil Schmidt, Weiguo Liu, Wolfgang...
ICASSP
2010
IEEE
13 years 8 months ago
Partial sequence matching using an Unbounded Dynamic Time Warping algorithm
Before the advent of Hidden Markov Models(HMM)-based speech recognition, many speech applications were built using pattern matching algorithms like the Dynamic Time Warping (DTW) ...
Xavier Anguera, Robert Macrae, Nuria Oliver