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» Comparative modeling without implicit sequence alignments
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IBPRIA
2009
Springer
14 years 1 months ago
Variable Order Finite-Context Models in DNA Sequence Coding
Abstract. Being an essential key in biological research, the DNA sequences are often shared between researchers and digitally stored for future use. As these sequences grow in volu...
Daniel A. Martins, António J. R. Neves, Arm...
NIPS
2003
13 years 10 months ago
Inferring State Sequences for Non-linear Systems with Embedded Hidden Markov Models
We describe a Markov chain method for sampling from the distribution of the hidden state sequence in a non-linear dynamical system, given a sequence of observations. This method u...
Radford M. Neal, Matthew J. Beal, Sam T. Roweis
ICS
2001
Tsinghua U.
14 years 1 months ago
Multiplex: unifying conventional and speculative thread-level parallelism on a chip multiprocessor
Recent proposals for Chip Multiprocessors (CMPs) advocate speculative, or implicit, threading in which the hardware employs prediction to peel off instruction sequences (i.e., imp...
Chong-liang Ooi, Seon Wook Kim, Il Park, Rudolf Ei...
DAC
1997
ACM
14 years 23 days ago
Sequence Compaction for Probabilistic Analysis of Finite-State Machines
- The objective of this paper is to provide an effective technique for accurate modeling of the external input sequences that affect the behavior of Finite State Machines (FSMs). T...
Diana Marculescu, Radu Marculescu, Massoud Pedram
BMCBI
2011
13 years 3 months ago
PICS-Ord: Unlimited Coding of Ambiguous Regions by Pairwise Identity and Cost Scores Ordination
Background: We present a novel method to encode ambiguously aligned regions in fixed multiple sequence alignments by ‘Pairwise Identity and Cost Scores Ordination’ (PICS-Ord)....
Robert K. Luecking, Brendan P. Hodkinson, Alexandr...