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» Comparing Sequences with Segment Rearrangements
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CSB
2003
IEEE
106views Bioinformatics» more  CSB 2003»
14 years 23 days ago
Reconstruction of Ancestral Gene Order after Segmental Duplication and Gene Loss
As gene order evolves through a variety of chromosomal rearrangements, conserved segments provide important insight into evolutionary relationships and functional roles of genes. ...
Jun Huan, Jan Prins, Wei Wang 0010, Todd J. Vision
RECOMB
2006
Springer
14 years 7 months ago
Sorting by Translocations Via Reversals Theory
Abstract. The understanding of genome rearrangements is an important endeavor in comparative genomics. A major computational problem in this field is finding a shortest sequence of...
Michal Ozery-Flato, Ron Shamir
NAR
2008
87views more  NAR 2008»
13 years 7 months ago
The CGView Server: a comparative genomics tool for circular genomes
The CGView Server generates graphical maps of circular genomes that show sequence features, base composition plots, analysis results and sequence similarity plots. Sequences can b...
Jason R. Grant, Paul Stothard
RECOMB
2003
Springer
14 years 7 months ago
Whole-genome comparative annotation and regulatory motif discovery in multiple yeast species
In [13] we reported the genome sequences of S. paradoxus, S. mikatae and S. bayanus and compared these three yeast species to their close relative, S. cerevisiae. Genome-wide comp...
Manolis Kamvysselis, Nick Patterson, Bruce Birren,...
EDBT
2008
ACM
166views Database» more  EDBT 2008»
14 years 7 months ago
OrthoCluster: a new tool for mining synteny blocks and applications in comparative genomics
By comparing genomes among both closely and distally related species, comparative genomics analysis characterizes structures and functions of different genomes in both conserved a...
Xinghuo Zeng, Matthew J. Nesbitt, Jian Pei, Ke Wan...