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» Comparing Sequences with Segment Rearrangements
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RECOMB
2006
Springer
14 years 7 months ago
A Parsimony Approach to Genome-Wide Ortholog Assignment
The assignment of orthologous genes between a pair of genomes is a fundamental and challenging problem in comparative genomics, since many computational methods for solving various...
Zheng Fu, Xin Chen, Vladimir Vacic, Peng Nan, Yang...
ICDM
2009
IEEE
97views Data Mining» more  ICDM 2009»
14 years 2 months ago
Hierarchical Probabilistic Segmentation of Discrete Events
—Segmentation, the task of splitting a long sequence of discrete symbols into chunks, can provide important information about the nature of the sequence that is understandable to...
Guy Shani, Christopher Meek, Asela Gunawardana
BMCBI
2010
126views more  BMCBI 2010»
13 years 7 months ago
Cgaln: fast and space-efficient whole-genome alignment
Background: Whole-genome sequence alignment is an essential process for extracting valuable information about the functions, evolution, and peculiarities of genomes under investig...
Ryuichiro Nakato, Osamu Gotoh
ICML
2006
IEEE
14 years 8 months ago
Efficient inference on sequence segmentation models
Sequence segmentation is a flexible and highly accurate mechanism for modeling several applications. Inference on segmentation models involves dynamic programming computations tha...
Sunita Sarawagi
BMCBI
2008
154views more  BMCBI 2008»
13 years 7 months ago
GenomeMatcher: A graphical user interface for DNA sequence comparison
Background: The number of available genome sequences is increasing, and easy-to-use software that enables efficient comparative analysis is needed. Results: We developed GenomeMat...
Yoshiyuki Ohtsubo, Wakako Ikeda-Ohtsubo, Yuji Naga...