Sciweavers

2345 search results - page 123 / 469
» Comparing sequence scaffolds
Sort
View
BMCBI
2008
86views more  BMCBI 2008»
15 years 2 months ago
Subfamily specific conservation profiles for proteins based on n-gram patterns
Background: A new algorithm has been developed for generating conservation profiles that reflect the evolutionary history of the subfamily associated with a query sequence. It is ...
John K. Vries, Xiong Liu
115
Voted
BMCBI
2006
87views more  BMCBI 2006»
15 years 2 months ago
Phylogeny based discovery of regulatory elements
Background: Algorithms that locate evolutionarily conserved sequences have become powerful tools for finding functional DNA elements, including transcription factor binding sites;...
Jason Gertz, Justin C. Fay, Barak A. Cohen
NAR
2006
119views more  NAR 2006»
15 years 2 months ago
ChloroplastDB: the Chloroplast Genome Database
The Chloroplast Genome Database (ChloroplastDB) is an interactive, web-based database for fully sequenced plastid genomes, containing genomic, protein, DNA and RNA sequences, gene...
Liying Cui, Narayanan Veeraraghavan, Alexander Ric...
BMCBI
2004
119views more  BMCBI 2004»
15 years 2 months ago
Genome SEGE: A database for 'intronless' genes in eukaryotic genomes
Background: A number of completely sequenced eukaryotic genome data are available in the public domain. Eukaryotic genes are either 'intron containing' or 'intronle...
Meena K. Sakharkar, Pandjassarame Kangueane
JMLR
2012
13 years 4 months ago
Deterministic Annealing for Semi-Supervised Structured Output Learning
In this paper we propose a new approach for semi-supervised structured output learning. Our approach uses relaxed labeling on unlabeled data to deal with the combinatorial nature ...
Paramveer S. Dhillon, S. Sathiya Keerthi, Kedar Be...