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DCC
2009
IEEE
14 years 8 months ago
Source Coding Scheme for Multiple Sequence Alignments
Rapid development of DNA sequencing technologies exponentially increases the amount of publicly available genomic data. Whole genome multiple sequence alignments represent a parti...
Pavol Hanus, Janis Dingel, Georg Chalkidis, Joachi...
ANOR
2005
93views more  ANOR 2005»
13 years 7 months ago
Evolutionary Approaches to DNA Sequencing with Errors
In the paper, two evolutionary approaches to the general DNA sequencing problem, assuming both negative and positive errors in the spectrum, are compared. The older of them is base...
Jacek Blazewicz, Fred Glover, Marta Kasprzak
TCOM
2008
89views more  TCOM 2008»
13 years 7 months ago
Construction of block orthogonal golay sequences and application to channel estimation of mimo-ofdm systems
In this paper, we construct a family of block orthogonal Golay sequences that have low peak-to-mean envelope power ratio (PMEPR) as well as blockwise orthogonal properties. We then...
Oh-Soon Shin, H. T. Kung, Vahid Tarokh
RECOMB
2004
Springer
14 years 8 months ago
Chromosomal breakpoint re-use in the inference of genome sequence rearrangement
In order to apply gene-order rearrangement algorithms to the comparison of genome sequences, Pevzner and Tesler [9] bypass gene finding and ortholog identification, and use the or...
David Sankoff, Phil Trinh
BMCBI
2008
154views more  BMCBI 2008»
13 years 7 months ago
Sequence based residue depth prediction using evolutionary information and predicted secondary structure
Background: Residue depth allows determining how deeply a given residue is buried, in contrast to the solvent accessibility that differentiates between buried and solvent-exposed ...
Hua Zhang, Tuo Zhang, Ke Chen 0003, Shiyi Shen, Ji...