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» Comparing sequence scaffolds
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SAC
2004
ACM
14 years 1 months ago
A new algorithm for gap constrained sequence mining
The sequence mining problem consists in finding frequent sequential patterns in a database of time-stamped events. Several application domains require limiting the maximum tempor...
Salvatore Orlando, Raffaele Perego, Claudio Silves...
IBPRIA
2009
Springer
14 years 8 days ago
Variable Order Finite-Context Models in DNA Sequence Coding
Abstract. Being an essential key in biological research, the DNA sequences are often shared between researchers and digitally stored for future use. As these sequences grow in volu...
Daniel A. Martins, António J. R. Neves, Arm...
BIOCOMP
2010
13 years 4 months ago
Using the Genetic Code Wisdom for Recognizing Protein Coding Sequences
We have elaborated a new method of recognizing protein coding sequences in genomic sequences. The method is exploiting a specific way of genetic code degeneration and relations bet...
Pawel Blazej, Pawel Mackiewicz, Stanislaw Cebrat
ECOOP
2005
Springer
14 years 1 months ago
Lightweight Defect Localization for Java
A common method to localize defects is to compare the coverage of passing and failing program runs: A method executed only in failing runs, for instance, is likely to point to the ...
Valentin Dallmeier, Christian Lindig, Andreas Zell...
RECOMB
2009
Springer
14 years 8 months ago
Simultaneous Alignment and Folding of Protein Sequences
Abstract. Accurate comparative analysis tools for low-homology proteins remains a difficult challenge in computational biology, especially sequence alignment and consensus folding ...
Bonnie Berger, Charles W. O'Donnell, Jér&oc...