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» Comparison of Additive Trees Using Circular Orders
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GD
2005
Springer
14 years 27 days ago
Drawing Graphs Using Modular Decomposition
Abstract. In this paper we present an algorithm for drawing an undirected graph G which takes advantage of the structure of the modular decomposition tree of G. Specifically, our ...
Charis Papadopoulos, Constantinos Voglis
ENTCS
2006
143views more  ENTCS 2006»
13 years 7 months ago
Hiproofs: A Hierarchical Notion of Proof Tree
Motivated by the concerns of theorem-proving, we generalise the notion of proof tree to that of hierarchical proof tree. Hierarchical trees extend ordinary trees by adding partial...
Ewen Denney, John Power, Konstantinos Tourlas

Publication
404views
14 years 4 months ago
Bayesian variable order Markov models.
We present a simple, effective generalisation of variable order Markov models to full online Bayesian estimation. The mechanism used is close to that employed in context tree wei...
Christos Dimitrakakis
BMCBI
2007
115views more  BMCBI 2007»
13 years 7 months ago
Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites
Background: We performed an exhaustive search for local structural similarities in an ensemble of non-redundant protein functional sites. With the purpose of finding new examples ...
Gabriele Ausiello, Daniele Peluso, Allegra Via, Ma...
BMCBI
2007
82views more  BMCBI 2007»
13 years 7 months ago
Visualization of three-way comparisons of omics data
Background: Density plot visualizations (also referred to as heat maps or color maps) are widely used in different fields including large-scale omics studies in biological science...
Richard Baran, Martin Robert, Makoto Suematsu, Tom...