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RECOMB
2006
Springer
14 years 9 months ago
Domain Architecture in Homolog Identification
Homology identification is the first step for many genomic studies. Current methods, based on sequence comparison, can result in a substantial number of mis-assignments due to the ...
Nan Song, R. D. Sedgewick, Dannie Durand
IPPS
1998
IEEE
14 years 1 months ago
Local Enumeration Techniques for Sparse Algorithms
Several methods have been proposed in the literature for the local enumeration of dense references for arrays distributed by the CYCLIC(k) data-distributionin High Performance For...
Gerardo Bandera, Pablo P. Trabado, Emilio L. Zapat...
IPPS
1998
IEEE
14 years 1 months ago
Testing of Synchronization Conditions for Distributed Real-Time Applications
A set of synchronization relations between distributed nonatomic events was recently proposed to provide real-time applications with a fine level of discrimination in the specifica...
Ajay D. Kshemkalyani
HPDC
2010
IEEE
13 years 10 months ago
MPIPairwiseStatSig: parallel pairwise statistical significance estimation of local sequence alignment
Sequence comparison is considered as a cornerstone application in bioinformatics, which forms the basis of many other applications. In particular, pairwise sequence alignment is a...
Ankit Agrawal, Sanchit Misra, Daniel Honbo, Alok N...
ESCIENCE
2007
IEEE
14 years 26 days ago
Grid-Enabling an Efficient Algorithm for Demanding Global Optimization Problems in Genetic Analysis
Abstract. We study the implementation on grid systems of an efficient algorithm for demanding global optimization problems. Specifically, we consider problems arising in the geneti...
Mahen Jayawardena, Sverker Holmgren