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ISSAC
2007
Springer
128views Mathematics» more  ISSAC 2007»
14 years 3 months ago
Productivity and performance using partitioned global address space languages
Partitioned Global Address Space (PGAS) languages combine the programming convenience of shared memory with the locality and performance control of message passing. One such langu...
Katherine A. Yelick, Dan Bonachea, Wei-Yu Chen, Ph...
BMCBI
2006
102views more  BMCBI 2006»
13 years 9 months ago
SNA - a toolbox for the stoichiometric analysis of metabolic networks
Background: Despite recent algorithmic and conceptual progress, the stoichiometric network analysis of large metabolic models remains a computationally challenging problem. Result...
Robert Urbanczik
ICDCS
2011
IEEE
12 years 8 months ago
Provisioning a Multi-tiered Data Staging Area for Extreme-Scale Machines
—Massively parallel scientific applications, running on extreme-scale supercomputers, produce hundreds of terabytes of data per run, driving the need for storage solutions to im...
Ramya Prabhakar, Sudharshan S. Vazhkudai, Youngjae...
BMCBI
2010
156views more  BMCBI 2010»
13 years 9 months ago
Comparative classification of species and the study of pathway evolution based on the alignment of metabolic pathways
Background: Pathways provide topical descriptions of cellular circuitry. Comparing analogous pathways reveals intricate insights into individual functional differences among speci...
Adi Mano, Tamir Tuller, Oded Béjà, R...
CCECE
2006
IEEE
14 years 3 months ago
Dynamic and Parallel Approaches to Optimal Evolutionary Tree Construction
Phylogenetic trees are commonly reconstructed based on hard optimization problems such as Maximum parsimony (MP) and Maximum likelihood (ML). Conventional MP heuristics for produc...
Anupam Bhattacharjee, Kazi Zakia Sultana, Zalia Sh...