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IPPS
2008
IEEE
14 years 3 months ago
On synthesizing workloads emulating MPI applications
Evaluation of high performance parallel systems is a delicate issue, due to the difficulty of generating workloads that represent, with fidelity, those that will run on actual sys...
Javier Navaridas, José Miguel-Alonso, Franc...
HPCC
2005
Springer
14 years 2 months ago
Self-optimizing MPI Applications: A Simulation-Based Approach
Historically, high performance systems use schedulers and intelligent resource managers in order to optimize system usage and application performance. Most of the times, applicatio...
Emilio Mancini, Massimiliano Rak, Roberto Torella,...
GLOBECOM
2009
IEEE
14 years 3 months ago
Peer-to-Peer Single Hop Distributed Hash Tables
Abstract—Efficiently locating information in large-scale distributed systems is a challenging problem to which Peer-to-Peer (P2P) Distributed Hash Tables (DHTs) can provide a hi...
Luiz Rodolpho Monnerat, Cláudio L. Amorim
IPPS
2009
IEEE
14 years 3 months ago
Accelerating error correction in high-throughput short-read DNA sequencing data with CUDA
Emerging DNA sequencing technologies open up exciting new opportunities for genome sequencing by generating read data with a massive throughput. However, produced reads are signif...
Haixiang Shi, Bertil Schmidt, Weiguo Liu, Wolfgang...
BMCBI
2011
13 years 16 days ago
A user-friendly web portal for T-Coffee on supercomputers
Background: Parallel T-Coffee (PTC) was the first parallel implementation of the T-Coffee multiple sequence alignment tool. It is based on MPI and RMA mechanisms. Its purpose is t...
Josep Rius Torrento, Fernando Cores, Francesc Sols...