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IPPS
2006
IEEE
14 years 2 months ago
Bio-sequence database scanning on a GPU
Protein sequences with unknown functionality are often compared to a set of known sequences to detect functional similarities. Efficient dynamic programming algorithms exist for t...
Weiguo Liu, Bertil Schmidt, Gerrit Voss, Adrian Sc...
ICPP
1998
IEEE
14 years 1 months ago
Efficient Collective Communication on Heterogeneous Networks of Workstations
Networks of Workstations (NOW) have become an attractive alternative platform for high performance computing. Due to the commodity nature of workstations and interconnects and due...
Mohammad Banikazemi, Vijay Moorthy, Dhabaleswar K....
IEEEPACT
2005
IEEE
14 years 2 months ago
Characterization of TCC on Chip-Multiprocessors
Transactional Coherence and Consistency (TCC) is a novel coherence scheme for shared memory multiprocessors that uses programmer-defined transactions as the fundamental unit of p...
Austen McDonald, JaeWoong Chung, Hassan Chafi, Chi...
CLUSTER
2004
IEEE
13 years 8 months ago
Seamless Access to Decentralized Storage Services in Computational Grids via a Virtual File System
This paper describes a novel technique for establishing a virtual file system that allows data to be transferred user-transparently and on-demand across computing and storage serve...
Renato J. O. Figueiredo, Nirav H. Kapadia, Jos&eac...
RECOMB
2004
Springer
14 years 9 months ago
The Statistical Significance of Max-Gap Clusters
Identifying gene clusters, genomic regions that share local similarities in gene organization, is a prerequisite for many different types of genomic analyses, including operon pred...
Rose Hoberman, David Sankoff, Dannie Durand