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CLUSTER
2003
IEEE
14 years 27 days ago
A Cluster-Based Solution for High Performance Hmmpfam Using EARTH Execution Model
Hmmpfam is a widely used computation-intensive bioinformatics software for sequence classification. The contribution of this paper is the first largely scalable and robust clust...
Weirong Zhu, Yanwei Niu, Jizhu Lu, Chuan Shen, Gua...
PPAM
2007
Springer
14 years 1 months ago
Enhancing Productivity in High Performance Computing through Systematic Conditioning
Abstract. In order to take full advantage of high-end computing platforms, scientific applications often require modifications to source codes, and to their build systems that ge...
Magdalena Slawiñska, Jaroslaw Slawinski, Va...
HPCC
2007
Springer
14 years 1 months ago
High Performance FFT on SGI Altix 3700
We have developed a high-performance FFT on SGI Altix 3700, improving the efficiency of the floating-point operations required to compute FFT by using a kind of loop fusion techni...
Akira Nukada, Daisuke Takahashi, Reiji Suda, Akira...
HPCS
2005
IEEE
14 years 1 months ago
High Performance Derivative-Free Optimization Applied to Biomedical Image Registration
Abstract— Optimization of a similarity metric is an essential component in most medical image registration approaches based on image intensities. In this paper, two new, determin...
Mark P. Wachowiak, Terry M. Peters
PVM
2004
Springer
14 years 29 days ago
TEG: A High-Performance, Scalable, Multi-network Point-to-Point Communications Methodology
Abstract. TEG is a new component-based methodology for point-to-point messaging. Developed as part of the Open MPI project, TEG provides a configurable fault-tolerant capability f...
Timothy S. Woodall, Richard L. Graham, Ralph H. Ca...