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NAR
2008
122views more  NAR 2008»
13 years 8 months ago
The Rice Annotation Project Database (RAP-DB): 2008 update
The Rice Annotation Project Database (RAP-DB) was created to provide the genome sequence assembly of the International Rice Genome Sequencing Project (IRGSP), manually curated ann...
BMCBI
2005
169views more  BMCBI 2005»
13 years 8 months ago
MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes
Background: Cis-regulatory modules are combinations of regulatory elements occurring in close proximity to each other that control the spatial and temporal expression of genes. Th...
Voichita D. Marinescu, Isaac S. Kohane, Alberto Ri...
PPOPP
2009
ACM
14 years 9 months ago
Parallelization spectroscopy: analysis of thread-level parallelism in hpc programs
In this paper, we present a thorough analysis of thread-level parallelism available in production High Performance Computing (HPC) codes. We survey a number of techniques that are...
Arun Kejariwal, Calin Cascaval
CCGRID
2002
IEEE
14 years 1 months ago
Using TOP-C and AMPIC to Port Large Parallel Applications to the Computational Grid
Porting large applications to distributed computing platforms is a challenging task from a software engineering perspective. The Computational Grid has gained tremendous popularit...
Gene Cooperman, Henri Casanova, Jim Hayes, Thomas ...
BMCBI
2007
136views more  BMCBI 2007»
13 years 9 months ago
Genomorama: genome visualization and analysis
Background: The ability to visualize genomic features and design experimental assays that can target specific regions of a genome is essential for modern biology. To assist in the...
Jason D. Gans, Murray Wolinsky