We investigate the average-case speed and scalability of parallel algorithms executing on multiprocessors. Our performance metrics are average-speed and isospeed scalability. By m...
- A Unified Modeling Language (UML) description of the MASC model of parallel computation is presented. This UML description identifies MASC objects and specifies various object an...
Molecular Computation (MC) is massively parallel computation where data is stored and processed within objects of molecular size. Biomolecular Computation (BMC) is MC using biotec...
This paper presents a novel, parallel algorithm for generating top alignments. Top alignments are used for finding internal repeats in biological sequences like proteins and gene...
We demonstrate how Field Programmable Gate Arrays (FPGAs) may be used to address the computing challenges associated with assembling genome sequences from recent ultra-high-through...
Kristian Stevens, Henry Chen, Terry Filiba, Peter ...