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IPPS
1999
IEEE
14 years 1 months ago
Average-Case Analysis of Isospeed Scalability of Parallel Computations on Multiprocessors
We investigate the average-case speed and scalability of parallel algorithms executing on multiprocessors. Our performance metrics are average-speed and isospeed scalability. By m...
Keqin Li, Xian-He Sun
PDPTA
2000
13 years 10 months ago
On Using the UML to Describe the MASC Model of Parallel Computation
- A Unified Modeling Language (UML) description of the MASC model of parallel computation is presented. This UML description identifies MASC objects and specifies various object an...
Michael Scherger, Johnnie Potter, Jerry W. Baker
FSTTCS
1998
Springer
14 years 1 months ago
Alternative Computational Models: A Comparison of Biomolecular and Quantum Computation
Molecular Computation (MC) is massively parallel computation where data is stored and processed within objects of molecular size. Biomolecular Computation (BMC) is MC using biotec...
John H. Reif
SC
2003
ACM
14 years 2 months ago
A Million-Fold Speed Improvement in Genomic Repeats Detection
This paper presents a novel, parallel algorithm for generating top alignments. Top alignments are used for finding internal repeats in biological sequences like proteins and gene...
John W. Romein, Jaap Heringa, Henri E. Bal
FPL
2010
Springer
188views Hardware» more  FPL 2010»
13 years 6 months ago
SeqHive: A Reconfigurable Computer Cluster for Genome Re-sequencing
We demonstrate how Field Programmable Gate Arrays (FPGAs) may be used to address the computing challenges associated with assembling genome sequences from recent ultra-high-through...
Kristian Stevens, Henry Chen, Terry Filiba, Peter ...