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IPPS
1999
IEEE
14 years 1 months ago
Optimizing Irregular HPF Applications using Halos
This paper presents language features for High Performance Fortran HPF to specify non-local access patterns of distributed arrays, called halos, and to control the communication as...
Siegfried Benkner
IPPS
2007
IEEE
14 years 3 months ago
Low-Overhead LogGP Parameter Assessment for Modern Interconnection Networks
Network performance measurement and prediction is very important to predict the running time of high performance computing applications. The LogP model family has been proven to b...
Torsten Hoefler, Andre Lichei, Wolfgang Rehm
BMCBI
2007
113views more  BMCBI 2007»
13 years 9 months ago
PILER-CR: Fast and accurate identification of CRISPR repeats
Background: Sequencing of prokaryotic genomes has recently revealed the presence of CRISPR elements: short, highly conserved repeats separated by unique sequences of similar lengt...
Robert C. Edgar
ISPAN
2005
IEEE
14 years 2 months ago
An FPGA-Based Floating-Point Jacobi Iterative Solver
Within the parallel computing domain, field programmable gate arrays (FPGA) are no longer restricted to their traditional role as substitutes for application-specific integrated...
Gerald R. Morris, Viktor K. Prasanna
PPOPP
2012
ACM
12 years 4 months ago
Better speedups using simpler parallel programming for graph connectivity and biconnectivity
Speedups demonstrated for finding the biconnected components of a graph: 9x to 33x on the Explicit Multi-Threading (XMT) many-core computing platform relative to the best serial ...
James A. Edwards, Uzi Vishkin